Usage - HiveGraph - Wodak Lab

Creating your own Plot

The input consists of uploading two tab delimited files (see the "Graph" tab):

1. Nodes
   • Your node file requires a header (although header/column titles can be whatever you want).
   • There are seven columns:

     column number	column name	description	data type
     1	id	id of node (unique among all nodes in graph)	alphanumeric
     2	axis	name/label of axis	alphanumeric
     3	node label	text to display for node	alphanumeric
     4	node value	start position on its axis	float or integer
     5	node height	height along its axis	float or integer
     6	r	rgb: red	integer [0-255]
     7	g	rgb: green	integer [0-255]
     8	b	rgb: blue	integer [0-255]
     9	a	alpha (transparency)	integer [0-255]

     for example:

                                 id       axis    label   value   height  r       g       b       a   
                                 a-an1    a       an1     188     1       255     147     157     200 
                                 a-an2    a       an2     167     2       255     188     235     200 
                                 a-an3    a       an3     249     1       255     24      68      200 
                                 a-an4    a       an4     211     3       255     136     97      200 
                                 a-an5    a       an5     2       1       255     47      118     200 
                                 a-an6    a       an6     100     1       255     248     130     200 
                                 a-an7    a       an7     249     1       255     239     131     200 
                                 
                                 

2. Links
   • Your link file requires a header (although header/column titles can be whatever you want).
   • Two columns are required:

     column number	column name	description	data type
     1	start node id	unique identifier of node from which the link starts	alphanumeric
     2	end node id	unique identifier of node where the link ends	alphanumeric

     for example:

                                 start     end
                                 a-an1     b-bn46
                                 a-an2     b-bn47
                                 a-an3     b-bn48
                                 a-an4     b-bn49
                                 a-an5     b-bn50
                                 a-an6     b-bn51
                                 a-an7     b-bn52